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Doxymodules_medical.h
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1// The example class categories definitions for Doxygen
2
3/// \file Doxymodules_medical.h
4/// \brief The page that defines the extended/medical examples modules
5
6
7/** @defgroup extended_medical medical
8 * Extended medical examples classes
9 * @{
10 */
11
12/** @defgroup extended_medical_DICOM DICOM
13 * Medical example DICOM
14 * @ingroup extended_medical
15 * @{
16 */
17
18 class DicomActionInitialization {};
19 class DicomDetectorConstruction {};
20 class DicomEventAction {};
21 class DicomHandler {};
22 class DicomIntersectVolume {};
23 class DicomNestedParamDetectorConstruction {};
24 class DicomNestedPhantomParameterisation {};
25 class DicomPartialDetectorConstruction {};
26 class DicomPhantomParameterisationColour {};
27 class DicomPhantomZSliceHeader {};
28 class DicomPhantomZSliceMerged {};
29 class DicomPrimaryGeneratorAction {};
30 class DicomRegularDetectorConstruction {};
31 class DicomRunAction {};
32 class DicomRun {};
33
34/** @defgroup extended_medical_DICOM_dicomReader dicomReader
35 * dicomReader in medical example DICOM
36 * @ingroup extended_medical_DICOM
37 * @{
38 */
39
40 class DicomBeam {};
41 class DicomBeamBlock {};
42 class DicomBeamCompensator {};
43 class DicomBeamControlPoint {};
44 class DicomBeamDevice {};
45 class DicomBeamDevicePos {};
46 class DicomBeamDeviceRef {};
47 class DicomBeamWedge {};
48 class DicomFileCT {};
49 class DicomFileCT_NOdcmrt {};
50 class DicomFileMgr {};
51 class DicomFilePET {};
52 class DicomFilePlan {};
53 class DicomFileStructure {};
54 class DicomROI {};
55 class DicomROIContour {};
56 class DicomVBeamDevice {};
57 class DicomVFile {};
58 class DicomVFileImage {};
59
60/** @} */
61
62/** @} */
63
64/** @defgroup extended_medical_DICOM2 DICOM2
65 * Medical example DICOM2
66 * @ingroup extended_medical
67 * @{
68 */
69
70 class Dicom2ActionInitialization {};
71 class Dicom2PrimaryGeneratorAction {};
72
73/** @} */
74
75/** @defgroup extended_medical_electronScattering electronScattering
76 * Medical electronScattering example has its
77 * <a href="../html_electronScattering/html/index.html">standalone documentation </a>
78 * @ingroup extended_medical
79 * @{
80 */
81
82/** @} */
83
84/** @defgroup extended_medical_electronScattering2 electronScattering2
85 * Medical electronScattering2 example has its
86 * <a href="../html_electronScattering2/html/index.html">standalone documentation </a>
87 * @ingroup extended_medical
88 * @{
89 */
90
91/** @} */
92
93/** @defgroup extended_medical_fanoCavity fanoCavity
94 * Medical fanoCavity example has its
95 * <a href="../html_fanoCavity/html/index.html">standalone documentation </a>
96 * @ingroup extended_medical
97 * @{
98 */
99
100/** @} */
101
102/** @defgroup extended_medical_fanoCavity2 fanoCavity2
103 * Medical fanoCavity2 example has its
104 * <a href="../html_fanoCavity2/html/index.html">standalone documentation </a>
105 * @ingroup extended_medical
106 * @{
107 */
108
109/** @} */
110
111/** @defgroup extended_medical_GammaTherapy GammaTherapy
112 * Medical GammaTherapy example has its
113 * <a href="../html_GammaTherapy/html/index.html">standalone documentation </a>
114 * @ingroup extended_medical
115 * @{
116 */
117
118/** @} */
119
120/** @defgroup extended_medical_radiobiology radiobiology
121 * Medical example radiobiology
122 * @ingroup extended_medical
123 * @{
124 */
125
126 class RadioBio::ActionInitialization {};
127 class RadioBio::DetectorConstruction {};
128 class RadioBio::DetectorMessenger {};
129 class RadioBio::Dose {};
130 class RadioBio::DoseAccumulable {};
131 class RadioBio::DoseMessenger {};
132 class RadioBio::Hit {};
133 class RadioBio::IonLet {};
134 class RadioBio::LET {};
135 class RadioBio::LETAccumulable {};
136 class RadioBio::LETMessenger {};
137 class RadioBio::Manager {};
138 class RadioBio::PhysicsList {};
139 class RadioBio::PhysicsListMessenger {};
140 class RadioBio::PrimaryGeneratorAction {};
141 class RadioBio::RBE {};
142 class RadioBio::RBEAccumulable {};
143 class RadioBio::RBEMessenger {};
144 class RadioBio::RunAction {};
145 class RadioBio::SD {};
146 class RadioBio::VRadiobiologicalAccumulable {};
147 class RadioBio::VRadiobiologicalQuantity {};
148 class RadioBio::VoxelizedSensitiveDetector {};
149 class RadioBio::VoxelizedSensitiveDetectorMessenger {};
150
151/** @} */
152
153/** @defgroup extended_medical_dna dna
154 * Extended examples medical dna classes
155 * @{
156 */
157
158/** @defgroup extended_medical_dna_chem1 chem1
159 * Medical dna chem1 example has its
160 * <a href="../html_chem1/html/index.html">standalone documentation </a>
161 * @ingroup extended_medical_dna
162 * @{
163 */
164
165/** @} */
166
167/** @defgroup extended_medical_dna_chem2 chem2
168 * Medical dna chem2 example has its
169 * <a href="../html_chem2/html/index.html">standalone documentation </a>
170 * @ingroup extended_medical_dna
171 * @{
172 */
173
174/** @} */
175
176/** @defgroup extended_medical_dna_chem3 chem3
177 * Medical dna chem3 example has its
178 * <a href="../html_chem3/html/index.html">standalone documentation </a>
179 * @ingroup extended_medical_dna
180 * @{
181 */
182
183/** @} */
184
185/** @defgroup extended_medical_dna_chem4 chem4
186 * Medical dna chem4 example has its
187 * <a href="../html_chem4/html/index.html">standalone documentation </a>
188 * @ingroup extended_medical_dna
189 * @{
190 */
191
192/** @} */
193
194/** @defgroup extended_medical_dna_chem5 chem5
195 * Medical dna chem5 example has its
196 * <a href="../html_chem5/html/index.html">standalone documentation </a>
197 * @ingroup extended_medical_dna
198 * @{
199 */
200
201/** @} */
202
203/** @defgroup extended_medical_dna_chem6 chem6
204 * Medical dna chem6 example has its
205 * <a href="../html_chem6/html/index.html">standalone documentation </a>
206 * @ingroup extended_medical_dna
207 * @{
208 */
209
210/** @} */
211
212/** @defgroup extended_medical_dna_clustering clustering
213 * Medical dna clustering example has its
214 * <a href="../html_clustering/html/index.html">standalone documentation </a>
215 * @ingroup extended_medical_dna
216 * @{
217 */
218
219/** @} */
220
221/** @defgroup extended_medical_dna_dnadamage1 dnadamage1
222 * Medical dna dnadamage1 example has its
223 * <a href="../html_dnadamage1/html/index.html">standalone documentation </a>
224 * @ingroup extended_medical_dna
225 * @{
226 */
227
228/** @} */
229
230/** @defgroup extended_medical_dna_dnadamage2 dnadamage2
231 * Medical dna dnadamage2 example has its
232 * <a href="../html_dnadamage2/html/index.html">standalone documentation </a>
233 * @ingroup extended_medical_dna
234 * @{
235 */
236
237/** @} */
238
239/** @defgroup extended_medical_dna_dnaphysics dnaphysics
240 * Medical dna dnaphysics example has its
241 * <a href="../html_dnaphysics/html/index.html">standalone documentation </a>
242 * @ingroup extended_medical_dna
243 * @{
244 */
245
246/** @} */
247
248/** @defgroup extended_medical_dna_icsd icsd
249 * Medical dna icsd example has its
250 * <a href="../html_icsd/html/index.html">standalone documentation </a>
251 * @ingroup extended_medical_dna
252 * @{
253 */
254
255/** @} */
256
257/** @defgroup extended_medical_dna_jetcounter jetcounter
258 * Medical dna jetcounter example has its
259 * <a href="../html_jetcounter/html/index.html">standalone documentation </a>
260 * @ingroup extended_medical_dna
261 * @{
262 */
263
264/** @} */
265
266/** @defgroup extended_medical_dna_mfp mfp
267 * Medical dna mfp example has its
268 * <a href="../html_mfp/html/index.html">standalone documentation </a>
269 * @ingroup extended_medical_dna
270 * @{
271 */
272
273/** @} */
274
275/** @defgroup extended_medical_dna_microdosimetry microdosimetry
276 * Medical dna microdosimetry example has its
277 * <a href="../html_microdosimetry/html/index.html">standalone documentation </a>
278 * @ingroup extended_medical_dna
279 * @{
280 */
281
282/** @} */
283
284/** @defgroup extended_medical_dna_microprox microprox
285 * Medical dna microprox example has its
286 * <a href="../html_microprox/html/index.html">standalone documentation </a>
287 * @ingroup extended_medical_dna
288 * @{
289 */
290
291/** @} */
292
293/** @defgroup extended_medical_dna_microyz microyz
294 * Medical dna microyz example has its
295 * <a href="../html_microyz/html/index.html">standalone documentation </a>
296 * @ingroup extended_medical_dna
297 * @{
298 */
299
300/** @} */
301
302/** @defgroup extended_medical_dna_moleculardna moleculardna
303 * Medical dna moleculardna example has its
304 * <a href="../html_moleculardna/html/index.html">standalone documentation </a>
305 * @ingroup extended_medical_dna
306 * @{
307 */
308
309/** @} */
310
311/** @defgroup extended_medical_dna_neuron neuron
312 * Medical dna neuron example has its
313 * <a href="../html_neuron/html/index.html">standalone documentation </a>
314 * @ingroup extended_medical_dna
315 * @{
316 */
317
318/** @} */
319
320/** @defgroup extended_medical_dna_pdb4dna pdb4dna
321 * Medical dna pdb4dna example has its
322 * <a href="../html_pdb4dna/html/index.html">standalone documentation </a>
323 * @ingroup extended_medical_dna
324 * @{
325 */
326
327/** @} */
328
329/** @defgroup extended_medical_dna_range range
330 * Medical dna range example has its
331 * <a href="../html_range/html/index.html">standalone documentation </a>
332 * @ingroup extended_medical_dna
333 * @{
334 */
335
336/** @} */
337
338/** @defgroup extended_medical_dna_scavenger scavenger
339 * Medical dna scavenger example
340 * @ingroup extended_medical_dna
341 * @{
342 */
343
344 class scavenger::ActionInitialization{};
345 class scavenger::DetectorConstruction{};
346 class scavenger::EmDNAChemistry{};
347 class scavenger::ParserChemReaction{};
348 class scavenger::PhysicsList{};
349 class scavenger::PrimaryGeneratorAction{};
350 class scavenger::PrimaryKiller{};
351 class scavenger::Run{};
352 class scavenger::RunAction{};
353 class scavenger::ScoreSpecies{};
354 class scavenger::StackingAction{};
355 class scavenger::TimeStepAction{};
356
357/** @} */
358
359/** @defgroup extended_medical_dna_slowing slowing
360 * Medical dna slowing example has its
361 * <a href="../html_slowing/html/index.html">standalone documentation </a>
362 * @ingroup extended_medical_dna
363 * @{
364 */
365
366/** @} */
367
368/** @defgroup extended_medical_dna_splitting splitting
369 * Medical dna splitting example has its
370 * <a href="../html_splitting/html/index.html">standalone documentation </a>
371 * @ingroup extended_medical_dna
372 * @{
373 */
374
375/** @} */
376
377/** @defgroup extended_medical_dna_spower spower
378 * Medical dna spower example has its
379 * <a href="../html_spower/html/index.html">standalone documentation </a>
380 * @ingroup extended_medical_dna
381 * @{
382 */
383
384/** @} */
385
386/** @defgroup extended_medical_dna_svalue svalue
387 * Medical dna svalue example has its
388 * <a href="../html_svalue/html/index.html">standalone documentation </a>
389 * @ingroup extended_medical_dna
390 * @{
391 */
392
393/** @} */
394
395/** @defgroup extended_medical_dna_wholeNuclearDNA wholeNuclearDNA
396 * Medical dna wholeNuclearDNA example has its
397 * <a href="../html_wholeNuclearDNA/html/index.html">standalone documentation </a>
398 * @ingroup extended_medical_dna
399 * @{
400 */
401
402/** @} */
403
404/** @defgroup extended_medical_dna_wvalue wvalue
405 * Medical dna wvalue example has its
406 * <a href="../html_wvalue/html/index.html">standalone documentation </a>
407 * @ingroup extended_medical_dna
408 * @{
409 */
410
411/** @} */
412
413/** @defgroup extended_medical_dna_AuNP AuNP
414 * Medical dna AuNP example has its
415 * <a href="../html_AuNP/html/index.html">standalone documentation </a>
416 * @ingroup extended_medical_dna
417 * @{
418 */
419
420/** @} */
421
422/** @defgroup extended_medical_dna_UHDR UHDR
423 * Medical dna UHDR example has its
424 * <a href="../html_UHDR/html/index.html">standalone documentation </a>
425 * @ingroup extended_medical_dna
426 * @{
427 */
428
429/** @} */
430
431/** @} */
432
433/** @} */
Dicom2ActionInitialization
Action initialization class.
Definition Doxymodules_medical.h:70
Dicom2PrimaryGeneratorAction
The primary generator action class with particle gun.
Definition Doxymodules_medical.h:71
DicomFileCT_NOdcmrt
Definition Doxymodules_medical.h:49
DicomIntersectVolume
Manages intersections of DICOM files with volumes.
Definition Doxymodules_medical.h:22
DicomNestedParamDetectorConstruction
Construct the phantom using DicomPhantomParameterisationColour.
Definition Doxymodules_medical.h:23
DicomNestedPhantomParameterisation
Implements a G4VNestedParameterisation.
Definition Doxymodules_medical.h:24
DicomPartialDetectorConstruction
Construct a DICOM Geant4 geometry produced from the intersetion of a DICOM file and a volume.
Definition Doxymodules_medical.h:25
DicomPhantomParameterisationColour
Class inherited from G4PhantomParameterisation to provide different.
Definition Doxymodules_medical.h:26
DicomPhantomZSliceHeader
DicomPhantomZSliceHeader class.
Definition Doxymodules_medical.h:27
DicomRegularDetectorConstruction
DicomRegularDetectorConstruction class.
Definition Doxymodules_medical.h:30
DicomRun
DicomRun class.
Definition Doxymodules_medical.h:32
RadioBio::ActionInitialization
Action initialization class.
Definition Doxymodules_medical.h:126
RadioBio::DetectorConstruction
Mandatory class for the construction of geometry.
Definition Doxymodules_medical.h:127
RadioBio::DoseAccumulable
Accumulable of Dose-related data (that must be thread-local).
Definition Doxymodules_medical.h:130
RadioBio::Hit
Detector hit class.
Definition Doxymodules_medical.h:132
RadioBio::IonLet
class to save and hold data for LET of different ions
Definition Doxymodules_medical.h:133
RadioBio::LETAccumulable
Accumulable of LET-related data (that must be thread-local).
Definition Doxymodules_medical.h:135
RadioBio::RBEAccumulable
Accumulable of RBE-related data (that must be thread-local).
Definition Doxymodules_medical.h:142
RadioBio::SD
RadioBio sensitive detector class.
Definition Doxymodules_medical.h:145
RadioBio::VoxelizedSensitiveDetector
Singleton class performing the voxelization of the world volume and tracking of a voxel index given t...
Definition Doxymodules_medical.h:148
scavenger::ActionInitialization
Instantiates and registers to Geant4 kernel all user action classes.
Definition Doxymodules_medical.h:344
scavenger::DetectorConstruction
Defines the geometry and scorers for calculating chemical species yields.
Definition Doxymodules_medical.h:345
scavenger::EmDNAChemistry
Chemistry constructor with reading of the user file defining chemical reactions and scavengers (react...
Definition Doxymodules_medical.h:346
scavenger::ParserChemReaction
Parser to read user files defining chemical reactions and scavengers (reaction with background)
Definition Doxymodules_medical.h:347
scavenger::PhysicsList
Geant4 modular physics list using G4EmDNAPhysics_option2 and EmDNAChemistry constructors.
Definition Doxymodules_medical.h:348
scavenger::PrimaryKiller
Kill the primary particle:
Definition Doxymodules_medical.h:350
scavenger::Run
Collects information event per event from the hits collections.
Definition Doxymodules_medical.h:351
scavenger::ScoreSpecies
Primitive scorer class for scoring the radiolytic species produced after irradiation in a water volum...
Definition Doxymodules_medical.h:353
scavenger::StackingAction
Verifies whether physical tracks remain to be processed and triggers the chemical module.
Definition Doxymodules_medical.h:354
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